PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14377_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 37aa    MW: 4091.65 Da    PI: 8.2263
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14377_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.83.3e-101437124
                                          TSSS-HHHHHHHHHHHHHTTTT-H CS
                       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtW 24
                                          +g+WT+eEd++lvd++++ G gtW
  cra_locus_14377_iso_2_len_1351_ver_3 14 KGAWTPEEDKILVDYINKNGHGTW 37
                                          79********************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-11537IPR009057Homeodomain-like
PROSITE profilePS5129412.437937IPR017930Myb domain
SuperFamilySSF466894.79E-7937IPR009057Homeodomain-like
PfamPF002491.1E-71437IPR001005SANT/Myb domain
CDDcd001671.05E-41637No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 37 aa     Download sequence    Send to blast
MGRSPCCDKG GVKKGAWTPE EDKILVDYIN KNGHGTW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238528.13e-17PREDICTED: transcription factor MYB39
RefseqXP_006364874.13e-17PREDICTED: transcription factor MYB39
SwissprotQ7XBH42e-14MYB4_ORYSJ; Myb-related protein Myb4
TrEMBLA0A068UAM36e-18A0A068UAM3_COFCA; Uncharacterized protein
STRINGSolyc04g074170.1.19e-17(Solanum lycopersicum)
STRINGPGSC0003DMT4000163941e-16(Solanum tuberosum)